HL_8IFD_027
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UUGGGGCCGAAACGAUCUCA
- Length
- 20 nucleotides
- Bulged bases
- 8IFD|1|1A|U|1757, 8IFD|1|1A|A|1765, 8IFD|1|1A|A|1766, 8IFD|1|1A|A|1767
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|1A|U|1756
8IFD|1|1A|U|1757
8IFD|1|1A|G|1758
8IFD|1|1A|G|1759
8IFD|1|1A|G|1760
8IFD|1|1A|G|1761
8IFD|1|1A|C|1762
8IFD|1|1A|C|1763
8IFD|1|1A|G|1764
8IFD|1|1A|A|1765
8IFD|1|1A|A|1766
8IFD|1|1A|A|1767
8IFD|1|1A|C|1768
8IFD|1|1A|G|1769
8IFD|1|1A|A|1770
8IFD|1|1A|U|1771
8IFD|1|1A|C|1772
8IFD|1|1A|U|1773
8IFD|1|1A|C|1774
8IFD|1|1A|A|1775
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1G
- 60S ribosomal protein L5
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2E
- 60S ribosomal protein L11
- Chain 2w
- 40S ribosomal protein S15
- Chain 2z
- 40S ribosomal protein S18
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