Loop HL_8IFD

3D structure

PDB id: 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
Description: Dibekacin-added human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å

Loop

Sequence: GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACC
Length: 51 nucleotides
Bulged bases: 8IFD|1|1A|G|1981, 8IFD|1|1A|A|1984, 8IFD|1|1A|U|1997, 8IFD|1|1A|A|2009, 8IFD|1|1A|A|2010, 8IFD|1|1A|C|2011
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8IFD|1|1A|G|1969
8IFD|1|1A|A|1970
8IFD|1|1A|C|1971
8IFD|1|1A|G|1972
8IFD|1|1A|G|1973
8IFD|1|1A|U|1974
8IFD|1|1A|G|1975
8IFD|1|1A|G|1976
8IFD|1|1A|C|1977
8IFD|1|1A|C|1978
8IFD|1|1A|A|1979
8IFD|1|1A|U|1980
8IFD|1|1A|G|1981
8IFD|1|1A|G|1982
8IFD|1|1A|A|1983
8IFD|1|1A|A|1984
8IFD|1|1A|G|1985
8IFD|1|1A|U|1986
8IFD|1|1A|C|1987
8IFD|1|1A|G|1988
8IFD|1|1A|G|1989
8IFD|1|1A|A|1990
8IFD|1|1A|A|1991
8IFD|1|1A|U|1992
8IFD|1|1A|C|1993
8IFD|1|1A|C|1994
8IFD|1|1A|G|1995
8IFD|1|1A|C|1996
8IFD|1|1A|U|1997
8IFD|1|1A|A|1998
8IFD|1|1A|A|1999
8IFD|1|1A|G|2000
8IFD|1|1A|G|2001
8IFD|1|1A|A|2002
8IFD|1|1A|G|2003
8IFD|1|1A|U|2004
8IFD|1|1A|G|2005
8IFD|1|1A|U|2006
8IFD|1|1A|G|2007
8IFD|1|1A|U|2008
8IFD|1|1A|A|2009
8IFD|1|1A|A|2010
8IFD|1|1A|C|2011
8IFD|1|1A|A|2012
8IFD|1|1A|A|2013
8IFD|1|1A|C|2014
8IFD|1|1A|U|2015
8IFD|1|1A|C|2016
8IFD|1|1A|A|2017
8IFD|1|1A|C|2018
8IFD|1|1A|C|2019

Current chains

Chain 1A: 28S ribosomal RNA

Nearby chains

Chain 2D: 60S ribosomal protein L10-like
Chain 2g: Large ribosomal subunit protein eL40

HL_8IFD_031