HL_8IFD_032
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CAGUCGAGAGUGGACGGGAGCGGCGGCCCGGAGCCCCGCGGACGCUACG
- Length
- 49 nucleotides
- Bulged bases
- 8IFD|1|1A|U|2097, 8IFD|1|1A|C|2113, 8IFD|1|1A|C|2255, 8IFD|1|1A|U|2267, 8IFD|1|1A|C|2269
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|1A|C|2087
8IFD|1|1A|A|2088
8IFD|1|1A|G|2089
8IFD|1|1A|U|2090
8IFD|1|1A|C|2091
8IFD|1|1A|G|2092
8IFD|1|1A|A|2093
8IFD|1|1A|G|2094
8IFD|1|1A|A|2095
8IFD|1|1A|G|2096
8IFD|1|1A|U|2097
8IFD|1|1A|G|2098
8IFD|1|1A|G|2099
8IFD|1|1A|A|2100
8IFD|1|1A|C|2101
8IFD|1|1A|G|2102
8IFD|1|1A|G|2103
8IFD|1|1A|G|2104
8IFD|1|1A|A|2105
8IFD|1|1A|G|2106
8IFD|1|1A|C|2107
8IFD|1|1A|G|2108
8IFD|1|1A|G|2109
8IFD|1|1A|C|2110
8IFD|1|1A|G|2111
8IFD|1|1A|G|2112
8IFD|1|1A|C|2113
8IFD|1|1A|C|2249
8IFD|1|1A|C|2250
8IFD|1|1A|G|2251
8IFD|1|1A|G|2252
8IFD|1|1A|A|2253
8IFD|1|1A|G|2254
8IFD|1|1A|C|2255
8IFD|1|1A|C|2256
8IFD|1|1A|C|2257
8IFD|1|1A|C|2258
8IFD|1|1A|G|2259
8IFD|1|1A|C|2260
8IFD|1|1A|G|2261
8IFD|1|1A|G|2262
8IFD|1|1A|A|2263
8IFD|1|1A|C|2264
8IFD|1|1A|G|2265
8IFD|1|1A|C|2266
8IFD|1|1A|U|2267
8IFD|1|1A|A|2268
8IFD|1|1A|C|2269
8IFD|1|1A|G|2270
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 1H
- 60S ribosomal protein L6
- Chain 2A
- 60S ribosomal protein L7
- Chain 2K
- 60S ribosomal protein L18
- Chain 2V
- 60S ribosomal protein L29
- Chain 2k
- 60S ribosomal protein L28
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