HL_8IFD_034

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_034 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1411

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8IFD|1|1A|A|2376
8IFD|1|1A|C|2377
8IFD|1|1A|G|2378
8IFD|1|1A|A|2379
8IFD|1|1A|G|2380
8IFD|1|1A|A|2381
8IFD|1|1A|A|2382
8IFD|1|1A|C|2383
8IFD|1|1A|U|2384

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2J

60S ribosomal protein L17

Chain 2L

60S ribosomal protein L19

Chain 2X

60S ribosomal protein L31