HL_8IFD_035

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8IFD|1|1A|G|2421, 8IFD|1|1A|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_035 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2205

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8IFD|1|1A|A|2420
8IFD|1|1A|G|2421
8IFD|1|1A|C|2422
8IFD|1|1A|A|2423
8IFD|1|1A|G|2424
8IFD|1|1A|U|2425
8IFD|1|1A|U|2426

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2J

60S ribosomal protein L17

Chain 2L

60S ribosomal protein L19

Chain 2f

60S ribosomal protein L39