HL_8IFD_038
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 8IFD|1|1A|U|2530, 8IFD|1|1A|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFD_038 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.0859
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IFD|1|1A|G|2523
8IFD|1|1A|U|2524
8IFD|1|1A|U|2525
8IFD|1|1A|C|2526
8IFD|1|1A|A|2527
8IFD|1|1A|G|2528
8IFD|1|1A|A|2529
8IFD|1|1A|U|2530
8IFD|1|1A|C|2531
8IFD|1|1A|C|2532
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2a
- 60S ribosomal protein L34
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