HL_8IFD_052

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_052 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.1748

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IFD|1|1A|A|3724
8IFD|1|1A|G|3725
8IFD|1|1A|A|3726
8IFD|1|1A|A|3727
8IFD|1|1A|A|3728
8IFD|1|1A|U|3729

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2c

60S ribosomal protein L36

Chain 2i

60S ribosomal protein L36a

Chain 2l

60S ribosomal protein L10a