HL_8IFD_053

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAGUAACUAUGACUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|G|3754
8IFD|1|1A|G|3755
8IFD|1|1A|A|3756
8IFD|1|1A|G|3757
8IFD|1|1A|U|3758
8IFD|1|1A|A|3759
8IFD|1|1A|A|3760
8IFD|1|1A|C|3761
8IFD|1|1A|U|3762
8IFD|1|1A|A|3763
8IFD|1|1A|U|3764
8IFD|1|1A|G|3765
8IFD|1|1A|A|3766
8IFD|1|1A|C|3767
8IFD|1|1A|U|3768
8IFD|1|1A|C|3769

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2m

Small subunit ribosomal RNA; SSU rRNA