HL_8IFD_055

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8IFD|1|1A|A|3876, 8IFD|1|1A|A|3877, 8IFD|1|1A|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0572

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8IFD|1|1A|G|3873
8IFD|1|1A|G|3874
8IFD|1|1A|G|3875
8IFD|1|1A|A|3876
8IFD|1|1A|A|3877
8IFD|1|1A|C|3878
8IFD|1|1A|G|3879
8IFD|1|1A|G|3880
8IFD|1|1A|G|3881
8IFD|1|1A|C|3882

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2Y

60S ribosomal protein L32