HL_8IFD_056
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCG
- Length
- 62 nucleotides
- Bulged bases
- 8IFD|1|1A|U|3957, 8IFD|1|1A|G|3958, 8IFD|1|1A|U|3959, 8IFD|1|1A|A|3962, 8IFD|1|1A|A|3963, 8IFD|1|1A|G|4034, 8IFD|1|1A|G|4036, 8IFD|1|1A|U|4044, 8IFD|1|1A|A|4046, 8IFD|1|1A|A|4047, 8IFD|1|1A|C|4059
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|1A|C|3948
8IFD|1|1A|A|3949
8IFD|1|1A|U|3950
8IFD|1|1A|G|3951
8IFD|1|1A|A|3952
8IFD|1|1A|G|3953
8IFD|1|1A|A|3954
8IFD|1|1A|G|3955
8IFD|1|1A|G|3956
8IFD|1|1A|U|3957
8IFD|1|1A|G|3958
8IFD|1|1A|U|3959
8IFD|1|1A|A|3960
8IFD|1|1A|G|3961
8IFD|1|1A|A|3962
8IFD|1|1A|A|3963
8IFD|1|1A|U|3964
8IFD|1|1A|A|3965
8IFD|1|1A|A|3966
8IFD|1|1A|G|3967
8IFD|1|1A|U|3968
8IFD|1|1A|G|3969
8IFD|1|1A|G|3970
8IFD|1|1A|G|3971
8IFD|1|1A|A|3972
8IFD|1|1A|G|3973
8IFD|1|1A|G|3974
8IFD|1|1A|C|3975
8IFD|1|1A|C|3976
8IFD|1|1A|C|3977
8IFD|1|1A|G|4034
8IFD|1|1A|G|4035
8IFD|1|1A|G|4036
8IFD|1|1A|C|4037
8IFD|1|1A|C|4038
8IFD|1|1A|G|4039
8IFD|1|1A|C|4040
8IFD|1|1A|C|4041
8IFD|1|1A|G|4042
8IFD|1|1A|G|4043
8IFD|1|1A|U|4044
8IFD|1|1A|G|4045
8IFD|1|1A|A|4046
8IFD|1|1A|A|4047
8IFD|1|1A|A|4048
8IFD|1|1A|U|4049
8IFD|1|1A|A|4050
8IFD|1|1A|C|4051
8IFD|1|1A|C|4052
8IFD|1|1A|A|4053
8IFD|1|1A|C|4054
8IFD|1|1A|U|4055
8IFD|1|1A|A|4056
8IFD|1|1A|C|4057
8IFD|1|1A|U|4058
8IFD|1|1A|C|4059
8IFD|1|1A|U|4060
8IFD|1|1A|G|4061
8IFD|1|1A|A|4062
8IFD|1|1A|U|4063
8IFD|1|1A|C|4064
8IFD|1|1A|G|4065
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2c
- 60S ribosomal protein L36
- Chain 2l
- 60S ribosomal protein L10a
- Chain 2o
- 40S ribosomal protein S3a
Coloring options: