HL_8IFD_057

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAGCCCCGAGGGGCUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_057 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2689

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|1A|G|4097
8IFD|1|1A|A|4098
8IFD|1|1A|G|4099
8IFD|1|1A|C|4100
8IFD|1|1A|C|4101
8IFD|1|1A|C|4102
8IFD|1|1A|C|4103
8IFD|1|1A|G|4104
8IFD|1|1A|A|4105
8IFD|1|1A|G|4106
8IFD|1|1A|G|4107
8IFD|1|1A|G|4108
8IFD|1|1A|G|4109
8IFD|1|1A|C|4110
8IFD|1|1A|U|4111
8IFD|1|1A|C|4112

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2a

60S ribosomal protein L34

Chain 2o

40S ribosomal protein S3a