HL_8IFD_070

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_070 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.0711

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8IFD|1|1A|C|4603
8IFD|1|1A|G|4604
8IFD|1|1A|A|4605
8IFD|1|1A|G|4606
8IFD|1|1A|A|4607
8IFD|1|1A|G|4608

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2g

Large ribosomal subunit protein eL40