HL_8IFD_072

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8IFD|1|1A|G|4694, 8IFD|1|1A|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_072 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0536

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8IFD|1|1A|C|4688
8IFD|1|1A|U|4689
8IFD|1|1A|G|4690
8IFD|1|1A|A|4691
8IFD|1|1A|A|4692
8IFD|1|1A|C|4693
8IFD|1|1A|G|4694
8IFD|1|1A|C|4695
8IFD|1|1A|C|4696
8IFD|1|1A|U|4697
8IFD|1|1A|C|4698
8IFD|1|1A|U|4699
8IFD|1|1A|A|4700
8IFD|1|1A|A|4701
8IFD|1|1A|G|4702

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2I

60S ribosomal protein L13a

Chain 2g

Large ribosomal subunit protein eL40