HL_8IFD_073

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUCCCCCGCGGGGUC

Length

15 nucleotides

Bulged bases

8IFD|1|1A|C|4771, 8IFD|1|1A|G|4776

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|G|4769
8IFD|1|1A|U|4770
8IFD|1|1A|C|4771
8IFD|1|1A|C|4772
8IFD|1|1A|C|4773
8IFD|1|1A|C|4774
8IFD|1|1A|C|4775
8IFD|1|1A|G|4776
8IFD|1|1A|C|4859
8IFD|1|1A|G|4860
8IFD|1|1A|G|4861
8IFD|1|1A|G|4862
8IFD|1|1A|G|4863
8IFD|1|1A|U|4864
8IFD|1|1A|C|4865

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2G

60S ribosomal protein L14

Chain 2I

60S ribosomal protein L13a