HL_8IFD_075
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUAGACGAC
- Length
- 9 nucleotides
- Bulged bases
- 8IFD|1|1A|U|4976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFD_075 not in the Motif Atlas
- Geometric match to HL_5J7L_201
- Geometric discrepancy: 0.1071
- The information below is about HL_5J7L_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8IFD|1|1A|G|4975
8IFD|1|1A|U|4976
8IFD|1|1A|A|4977
8IFD|1|1A|G|4978
8IFD|1|1A|A|4979
8IFD|1|1A|C|4980
8IFD|1|1A|G|4981
8IFD|1|1A|A|4982
8IFD|1|1A|C|4983
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2J
- 60S ribosomal protein L17
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