HL_8IFD_081

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8IFD|1|1C|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_081 not in the Motif Atlas

Homologous match to HL_8C3A_076

Geometric discrepancy: 0.193

The information below is about HL_8C3A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8IFD|1|1C|C|107
8IFD|1|1C|A|108
8IFD|1|1C|C|109
8IFD|1|1C|U|110
8IFD|1|1C|U|111
8IFD|1|1C|G|112

Current chains

Chain 1C

5.8S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2R

60S ribosomal protein L23a

Chain 2d

60S ribosomal protein L37

Chain 2f

60S ribosomal protein L39