HL_8IFD_082

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

8IFD|1|1C|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_082 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2289

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|1C|G|121
8IFD|1|1C|G|122
8IFD|1|1C|U|123
8IFD|1|1C|U|124
8IFD|1|1C|C|125
8IFD|1|1C|C|126
8IFD|1|1C|U|127
8IFD|1|1C|C|128
8IFD|1|1C|C|129

Current chains

Chain 1C

5.8S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2R

60S ribosomal protein L23a