HL_8IFD_085

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8IFD|1|2m|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_085 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.3392

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8IFD|1|2m|G|156
8IFD|1|2m|U|157
8IFD|1|2m|A|158
8IFD|1|2m|A|159
8IFD|1|2m|U|160
8IFD|1|2m|U|161
8IFD|1|2m|C|162

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3H

40S ribosomal protein S6

Chain 3N

40S ribosomal protein S24