HL_8IFD_087

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8IFD|1|2m|A|292, 8IFD|1|2m|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_087 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.382

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|2m|G|288
8IFD|1|2m|G|289
8IFD|1|2m|U|290
8IFD|1|2m|G|291
8IFD|1|2m|A|292
8IFD|1|2m|C|293
8IFD|1|2m|U|294
8IFD|1|2m|C|295

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6