HL_8IFD_092

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8IFD|1|2m|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_092 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.177

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8IFD|1|2m|C|462
8IFD|1|2m|C|463
8IFD|1|2m|A|464
8IFD|1|2m|A|465
8IFD|1|2m|G|466
8IFD|1|2m|G|467

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2P

60S ribosomal protein L23

Chain 3H

40S ribosomal protein S6