HL_8IFD_094

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GACUCUUUCGAGGC

Length

14 nucleotides

Bulged bases

8IFD|1|2m|C|539, 8IFD|1|2m|U|542, 8IFD|1|2m|C|543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|2m|G|535
8IFD|1|2m|A|536
8IFD|1|2m|C|537
8IFD|1|2m|U|538
8IFD|1|2m|C|539
8IFD|1|2m|U|540
8IFD|1|2m|U|541
8IFD|1|2m|U|542
8IFD|1|2m|C|543
8IFD|1|2m|G|544
8IFD|1|2m|A|545
8IFD|1|2m|G|546
8IFD|1|2m|G|547
8IFD|1|2m|C|548

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3Q

40S ribosomal protein S30