HL_8IFD_098

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

8IFD|1|2m|G|836, 8IFD|1|2m|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_098 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2801

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|2m|C|833
8IFD|1|2m|C|834
8IFD|1|2m|C|835
8IFD|1|2m|G|836
8IFD|1|2m|A|837
8IFD|1|2m|G|838
8IFD|1|2m|C|839
8IFD|1|2m|C|840
8IFD|1|2m|G|841

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24