HL_8IFD_110

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAGCGGUCG

Length

10 nucleotides

Bulged bases

8IFD|1|2m|C|1423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_110 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1367

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|2m|C|1419
8IFD|1|2m|G|1420
8IFD|1|2m|A|1421
8IFD|1|2m|G|1422
8IFD|1|2m|C|1423
8IFD|1|2m|G|1424
8IFD|1|2m|G|1425
8IFD|1|2m|U|1426
8IFD|1|2m|C|1427
8IFD|1|2m|G|1428

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 2x

40S ribosomal protein S16