HL_8IFD_115

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGGGGUGCCCUGGCGGCCCUG*G

Length

22 nucleotides

Bulged bases

8IFD|1|2m|C|1773, 8IFD|1|2m|C|1769, 8IFD|1|2m|G|1770, 8IFD|1|2m|C|1773

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|2m|C|1756
8IFD|1|2m|G|1757
8IFD|1|2m|G|1758
8IFD|1|2m|G|1759
8IFD|1|2m|G|1760
8IFD|1|2m|U|1761
8IFD|1|2m|G|1771
8IFD|1|2m|C|1772
8IFD|1|2m|C|1773
8IFD|1|2m|C|1774
8IFD|1|2m|U|1775
8IFD|1|2m|G|1776
8IFD|1|2m|G|1777
8IFD|1|2m|C|1769
8IFD|1|2m|G|1770
8IFD|1|2m|G|1771
8IFD|1|2m|C|1772
8IFD|1|2m|C|1773
8IFD|1|2m|C|1774
8IFD|1|2m|U|1775
8IFD|1|2m|G|1776
*
8IFD|1|2m|G|1777

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 3H

40S ribosomal protein S6