HL_8IFD_117

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

8IFD|1|1A|C|1365, 8IFD|1|1A|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|U|1364
8IFD|1|1A|C|1365
8IFD|1|1A|G|1366
8IFD|1|1A|C|1367
8IFD|1|1A|A|1368
8IFD|1|1A|C|1369
8IFD|1|1A|G|1370
8IFD|1|1A|A|1371
8IFD|1|1A|A|1372
8IFD|1|1A|A|1373

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 1F

60S ribosomal protein L4

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2S

60S ribosomal protein L26