HL_8IFE_002

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UAACCA

Length

6 nucleotides

Bulged bases

8IFE|1|1A|C|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_002 not in the Motif Atlas

Homologous match to HL_8C3A_002

Geometric discrepancy: 0.0686

The information below is about HL_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8IFE|1|1A|U|68
8IFE|1|1A|A|69
8IFE|1|1A|A|70
8IFE|1|1A|C|71
8IFE|1|1A|C|72
8IFE|1|1A|A|73

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2U

60S ribosomal protein L27a

Chain 2c

60S ribosomal protein L36