HL_8IFE_005

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8IFE|1|1A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2442

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8IFE|1|1A|U|204
8IFE|1|1A|C|205
8IFE|1|1A|U|206
8IFE|1|1A|G|207
8IFE|1|1A|A|208
8IFE|1|1A|U|209
8IFE|1|1A|C|210
8IFE|1|1A|G|211

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2S

60S ribosomal protein L26

Chain 2Y

60S ribosomal protein L32