Loop HL_8IFE

3D structure

PDB id: 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Arbekacin-added human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å

Loop

Sequence: GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACC
Length: 51 nucleotides
Bulged bases: 8IFE|1|1A|G|1981, 8IFE|1|1A|A|1984, 8IFE|1|1A|G|1988, 8IFE|1|1A|U|1992, 8IFE|1|1A|U|1997, 8IFE|1|1A|A|2009, 8IFE|1|1A|C|2011
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8IFE|1|1A|G|1969
8IFE|1|1A|A|1970
8IFE|1|1A|C|1971
8IFE|1|1A|G|1972
8IFE|1|1A|G|1973
8IFE|1|1A|U|1974
8IFE|1|1A|G|1975
8IFE|1|1A|G|1976
8IFE|1|1A|C|1977
8IFE|1|1A|C|1978
8IFE|1|1A|A|1979
8IFE|1|1A|U|1980
8IFE|1|1A|G|1981
8IFE|1|1A|G|1982
8IFE|1|1A|A|1983
8IFE|1|1A|A|1984
8IFE|1|1A|G|1985
8IFE|1|1A|U|1986
8IFE|1|1A|C|1987
8IFE|1|1A|G|1988
8IFE|1|1A|G|1989
8IFE|1|1A|A|1990
8IFE|1|1A|A|1991
8IFE|1|1A|U|1992
8IFE|1|1A|C|1993
8IFE|1|1A|C|1994
8IFE|1|1A|G|1995
8IFE|1|1A|C|1996
8IFE|1|1A|U|1997
8IFE|1|1A|A|1998
8IFE|1|1A|A|1999
8IFE|1|1A|G|2000
8IFE|1|1A|G|2001
8IFE|1|1A|A|2002
8IFE|1|1A|G|2003
8IFE|1|1A|U|2004
8IFE|1|1A|G|2005
8IFE|1|1A|U|2006
8IFE|1|1A|G|2007
8IFE|1|1A|U|2008
8IFE|1|1A|A|2009
8IFE|1|1A|A|2010
8IFE|1|1A|C|2011
8IFE|1|1A|A|2012
8IFE|1|1A|A|2013
8IFE|1|1A|C|2014
8IFE|1|1A|U|2015
8IFE|1|1A|C|2016
8IFE|1|1A|A|2017
8IFE|1|1A|C|2018
8IFE|1|1A|C|2019

Current chains

Chain 1A: 28S ribosomal RNA

Nearby chains

Chain 2D: 60S ribosomal protein L10-like
Chain 2g: Ubiquitin-60S ribosomal protein L40

HL_8IFE_031