HL_8IFE_041

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8IFE|1|1A|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2042

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8IFE|1|1A|G|2624
8IFE|1|1A|U|2625
8IFE|1|1A|U|2626
8IFE|1|1A|C|2627
8IFE|1|1A|U|2628
8IFE|1|1A|C|2629
8IFE|1|1A|U|2630
8IFE|1|1A|U|2631
8IFE|1|1A|U|2632

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2O

60S ribosomal protein L22