HL_8IFE_043

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8IFE|1|1A|U|2707

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_043 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2739

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8IFE|1|1A|G|2705
8IFE|1|1A|G|2706
8IFE|1|1A|U|2707
8IFE|1|1A|U|2708
8IFE|1|1A|C|2709
8IFE|1|1A|C|2710

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19