HL_8IFE_047

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8IFE|1|1A|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_047 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.0869

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8IFE|1|1A|C|2872
8IFE|1|1A|U|2873
8IFE|1|1A|U|2874
8IFE|1|1A|C|2875
8IFE|1|1A|G|2876
8IFE|1|1A|G|2877

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2h

60S ribosomal protein L41

Chain 2j

60S ribosomal protein L37a

Chain 2m

Small subunit ribosomal RNA; SSU rRNA