HL_8IFE_056
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- ACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGU
- Length
- 64 nucleotides
- Bulged bases
- 8IFE|1|1A|U|3959, 8IFE|1|1A|A|3960, 8IFE|1|1A|A|3962, 8IFE|1|1A|G|4034, 8IFE|1|1A|U|4044, 8IFE|1|1A|A|4053, 8IFE|1|1A|C|4059
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFE|1|1A|A|3947
8IFE|1|1A|C|3948
8IFE|1|1A|A|3949
8IFE|1|1A|U|3950
8IFE|1|1A|G|3951
8IFE|1|1A|A|3952
8IFE|1|1A|G|3953
8IFE|1|1A|A|3954
8IFE|1|1A|G|3955
8IFE|1|1A|G|3956
8IFE|1|1A|U|3957
8IFE|1|1A|G|3958
8IFE|1|1A|U|3959
8IFE|1|1A|A|3960
8IFE|1|1A|G|3961
8IFE|1|1A|A|3962
8IFE|1|1A|A|3963
8IFE|1|1A|U|3964
8IFE|1|1A|A|3965
8IFE|1|1A|A|3966
8IFE|1|1A|G|3967
8IFE|1|1A|U|3968
8IFE|1|1A|G|3969
8IFE|1|1A|G|3970
8IFE|1|1A|G|3971
8IFE|1|1A|A|3972
8IFE|1|1A|G|3973
8IFE|1|1A|G|3974
8IFE|1|1A|C|3975
8IFE|1|1A|C|3976
8IFE|1|1A|C|3977
8IFE|1|1A|G|4034
8IFE|1|1A|G|4035
8IFE|1|1A|G|4036
8IFE|1|1A|C|4037
8IFE|1|1A|C|4038
8IFE|1|1A|G|4039
8IFE|1|1A|C|4040
8IFE|1|1A|C|4041
8IFE|1|1A|G|4042
8IFE|1|1A|G|4043
8IFE|1|1A|U|4044
8IFE|1|1A|G|4045
8IFE|1|1A|A|4046
8IFE|1|1A|A|4047
8IFE|1|1A|A|4048
8IFE|1|1A|U|4049
8IFE|1|1A|A|4050
8IFE|1|1A|C|4051
8IFE|1|1A|C|4052
8IFE|1|1A|A|4053
8IFE|1|1A|C|4054
8IFE|1|1A|U|4055
8IFE|1|1A|A|4056
8IFE|1|1A|C|4057
8IFE|1|1A|U|4058
8IFE|1|1A|C|4059
8IFE|1|1A|U|4060
8IFE|1|1A|G|4061
8IFE|1|1A|A|4062
8IFE|1|1A|U|4063
8IFE|1|1A|C|4064
8IFE|1|1A|G|4065
8IFE|1|1A|U|4066
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2c
- 60S ribosomal protein L36
- Chain 2l
- 60S ribosomal protein L10a
- Chain 2o
- 40S ribosomal protein S3a
Coloring options: