HL_8IFE_057

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAGCCCCGAGGGGCUC

Length

16 nucleotides

Bulged bases

8IFE|1|1A|A|4105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|G|4097
8IFE|1|1A|A|4098
8IFE|1|1A|G|4099
8IFE|1|1A|C|4100
8IFE|1|1A|C|4101
8IFE|1|1A|C|4102
8IFE|1|1A|C|4103
8IFE|1|1A|G|4104
8IFE|1|1A|A|4105
8IFE|1|1A|G|4106
8IFE|1|1A|G|4107
8IFE|1|1A|G|4108
8IFE|1|1A|G|4109
8IFE|1|1A|C|4110
8IFE|1|1A|U|4111
8IFE|1|1A|C|4112

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2B

60S ribosomal protein L7a

Chain 2a

60S ribosomal protein L34

Chain 2o

40S ribosomal protein S3a