HL_8IFE_058

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GCGCGCC

Length

7 nucleotides

Bulged bases

8IFE|1|1A|C|4144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_058 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2011

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFE|1|1A|G|4139
8IFE|1|1A|C|4140
8IFE|1|1A|G|4141
8IFE|1|1A|C|4142
8IFE|1|1A|G|4143
8IFE|1|1A|C|4144
8IFE|1|1A|C|4145

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains