HL_8IFE_061

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_061 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.191

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8IFE|1|1A|G|4250
8IFE|1|1A|A|4251
8IFE|1|1A|C|4252
8IFE|1|1A|A|4253
8IFE|1|1A|G|4254
8IFE|1|1A|A|4255
8IFE|1|1A|A|4256
8IFE|1|1A|A|4257
8IFE|1|1A|C|4258

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2E

60S ribosomal protein L11