HL_8IFE_075

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8IFE|1|1A|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_075 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0817

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8IFE|1|1A|G|4975
8IFE|1|1A|U|4976
8IFE|1|1A|A|4977
8IFE|1|1A|G|4978
8IFE|1|1A|A|4979
8IFE|1|1A|C|4980
8IFE|1|1A|G|4981
8IFE|1|1A|A|4982
8IFE|1|1A|C|4983

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2J

60S ribosomal protein L17