HL_8IFE_086

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

8IFE|1|2m|U|198, 8IFE|1|2m|C|199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_086 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3379

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IFE|1|2m|C|196
8IFE|1|2m|U|197
8IFE|1|2m|U|198
8IFE|1|2m|C|199
8IFE|1|2m|G|200
8IFE|1|2m|C|201
8IFE|1|2m|G|202
8IFE|1|2m|G|203

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2t

40S ribosomal protein S8