HL_8IFE_093

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8IFE|1|2m|A|500, 8IFE|1|2m|C|502, 8IFE|1|2m|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_093 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.4696

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8IFE|1|2m|C|498
8IFE|1|2m|G|499
8IFE|1|2m|A|500
8IFE|1|2m|C|501
8IFE|1|2m|C|502
8IFE|1|2m|C|503
8IFE|1|2m|G|504

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3N

40S ribosomal protein S24