HL_8IFE_095

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_095 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1984

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8IFE|1|2m|A|569
8IFE|1|2m|C|570
8IFE|1|2m|U|571
8IFE|1|2m|U|572
8IFE|1|2m|U|573
8IFE|1|2m|A|574
8IFE|1|2m|A|575
8IFE|1|2m|A|576
8IFE|1|2m|U|577
8IFE|1|2m|C|578
8IFE|1|2m|C|579
8IFE|1|2m|U|580
8IFE|1|2m|U|581

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24