HL_8IFE_099

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCG

Length

18 nucleotides

Bulged bases

8IFE|1|2m|U|887, 8IFE|1|2m|G|891, 8IFE|1|2m|G|894, 8IFE|1|2m|U|896, 8IFE|1|2m|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|2m|C|884
8IFE|1|2m|U|885
8IFE|1|2m|A|886
8IFE|1|2m|U|887
8IFE|1|2m|U|888
8IFE|1|2m|U|889
8IFE|1|2m|U|890
8IFE|1|2m|G|891
8IFE|1|2m|U|892
8IFE|1|2m|U|893
8IFE|1|2m|G|894
8IFE|1|2m|G|895
8IFE|1|2m|U|896
8IFE|1|2m|U|897
8IFE|1|2m|U|898
8IFE|1|2m|U|899
8IFE|1|2m|C|900
8IFE|1|2m|G|901

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6