HL_8IFE_115
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- CGGGGUGCCCUGGCGGCCCUG*G
- Length
- 22 nucleotides
- Bulged bases
- 8IFE|1|2m|C|1772, 8IFE|1|2m|C|1773, 8IFE|1|2m|C|1769, 8IFE|1|2m|G|1770, 8IFE|1|2m|G|1771, 8IFE|1|2m|C|1772, 8IFE|1|2m|C|1773
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFE|1|2m|C|1756
8IFE|1|2m|G|1757
8IFE|1|2m|G|1758
8IFE|1|2m|G|1759
8IFE|1|2m|G|1760
8IFE|1|2m|U|1761
8IFE|1|2m|G|1771
8IFE|1|2m|C|1772
8IFE|1|2m|C|1773
8IFE|1|2m|C|1774
8IFE|1|2m|U|1775
8IFE|1|2m|G|1776
8IFE|1|2m|G|1777
8IFE|1|2m|C|1769
8IFE|1|2m|G|1770
8IFE|1|2m|G|1771
8IFE|1|2m|C|1772
8IFE|1|2m|C|1773
8IFE|1|2m|C|1774
8IFE|1|2m|U|1775
8IFE|1|2m|G|1776
*
8IFE|1|2m|G|1777
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2Q
- 60S ribosomal protein L24
- Chain 3H
- 40S ribosomal protein S6
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