HL_8INE_014

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCGGCGCGCCGG

Length

14 nucleotides

Bulged bases

8INE|1|2|C|991, 8INE|1|2|C|995, 8INE|1|2|G|996, 8INE|1|2|C|1047

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INE_014 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3914

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8INE|1|2|U|989
8INE|1|2|C|990
8INE|1|2|C|991
8INE|1|2|C|992
8INE|1|2|G|993
8INE|1|2|G|994
8INE|1|2|C|995
8INE|1|2|G|996
8INE|1|2|C|1047
8INE|1|2|G|1048
8INE|1|2|C|1049
8INE|1|2|C|1050
8INE|1|2|G|1051
8INE|1|2|G|1064

Current chains

Chain 2

28S rRNA

Nearby chains

Chain o

60S ribosomal protein L6