3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUCGCACGAAAG
Length
12 nucleotides
Bulged bases
8INE|1|2|C|1367, 8INE|1|2|A|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INE_018 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.3107
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

8INE|1|2|C|1363
8INE|1|2|U|1364
8INE|1|2|C|1365
8INE|1|2|G|1366
8INE|1|2|C|1367
8INE|1|2|A|1368
8INE|1|2|C|1369
8INE|1|2|G|1370
8INE|1|2|A|1371
8INE|1|2|A|1372
8INE|1|2|A|1373
8INE|1|2|G|1374

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain D
60S ribosomal protein L4
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15
Chain h
60S ribosomal protein L26

Coloring options:


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