HL_8INE_020

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8INE|1|2|U|1410, 8INE|1|2|C|1411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INE_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.385

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8INE|1|2|C|1405
8INE|1|2|G|1406
8INE|1|2|C|1407
8INE|1|2|G|1408
8INE|1|2|C|1409
8INE|1|2|U|1410
8INE|1|2|C|1411
8INE|1|2|G|1412

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29