3D structure

PDB id
8INE (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State G'
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AG(OMC)A(OMG)UU
Length
7 nucleotides
Bulged bases
8INE|1|2|G|2421, 8INE|1|2|A|2423, 8INE|1|2|U|2425
QA status
Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INE_036 not in the Motif Atlas
Homologous match to HL_5TBW_032
Geometric discrepancy: 0.2764
The information below is about HL_5TBW_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

8INE|1|2|A|2420
8INE|1|2|G|2421
8INE|1|2|OMC|2422
8INE|1|2|A|2423
8INE|1|2|OMG|2424
8INE|1|2|U|2425
8INE|1|2|U|2426

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain Y
60S ribosomal protein L17
Chain a
60S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2988 s