HL_8INE_052

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8INE|1|2|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INE_052 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.4369

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8INE|1|2|C|3668
8INE|1|2|G|3669
8INE|1|2|C|3670
8INE|1|2|G|3671
8INE|1|2|G|3672
8INE|1|2|C|3673
8INE|1|2|G|3674

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8