HL_8INE_074

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8INE|1|2|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INE_074 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1122

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8INE|1|2|G|4975
8INE|1|2|U|4976
8INE|1|2|A|4977
8INE|1|2|G|4978
8INE|1|2|A|4979
8INE|1|2|C|4980
8INE|1|2|G|4981
8INE|1|2|A|4982
8INE|1|2|C|4983

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Y

60S ribosomal protein L17