3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UAAGCAUA
Length
8 nucleotides
Bulged bases
8INF|1|2|A|39
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_001 not in the Motif Atlas
Homologous match to HL_8C3A_001
Geometric discrepancy: 0.1408
The information below is about HL_8C3A_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_36430.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8INF|1|2|U|37
8INF|1|2|A|38
8INF|1|2|A|39
8INF|1|2|G|40
8INF|1|2|C|41
8INF|1|2|A|42
8INF|1|2|U|43
8INF|1|2|A|44

Current chains

Chain 2
28S rRNA

Nearby chains

Chain L
60S ribosomal protein L27a
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15
Chain W
60S ribosomal protein L36a

Coloring options:


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