HL_8INF_005

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8INF|1|2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.274

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8INF|1|2|U|204
8INF|1|2|C|205
8INF|1|2|U|206
8INF|1|2|G|207
8INF|1|2|A|208
8INF|1|2|U|209
8INF|1|2|C|210
8INF|1|2|G|211

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 1

Uncharacterized protein C11orf98

Chain h

60S ribosomal protein L26