3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGUAAACUCC
Length
10 nucleotides
Bulged bases
8INF|1|2|G|315, 8INF|1|2|U|316
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_009 not in the Motif Atlas
Homologous match to HL_8C3A_009
Geometric discrepancy: 0.1658
The information below is about HL_8C3A_009
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_15076.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

8INF|1|2|G|314
8INF|1|2|G|315
8INF|1|2|U|316
8INF|1|2|A|317
8INF|1|2|A|318
8INF|1|2|A|319
8INF|1|2|C|320
8INF|1|2|U|321
8INF|1|2|C|322
8INF|1|2|C|323

Current chains

Chain 2
28S rRNA

Nearby chains

Chain K
60S ribosomal protein L36
Chain L
60S ribosomal protein L27a
Chain U
60S ribosomal protein L15
Chain W
60S ribosomal protein L36a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4867 s